Identification of a major qtl rna-seq

Author: fvyt

August undefined, 2024

Web5 feb. 2024 · QTL detection was performed using package “qtl” (vs. 1.44–9) in two steps, the first scan determining co-factors and the second scan identifying robust QTL, taking … Web7 mei 2012 · A. RNA-Seq reads shown in the Integrative Genomics Viewer. Blue indicates reads that have a forward orientation relative to the reference genome; red indicates reverse orientation. B. Based on the supporting ESTs and the annotation from the gene models, the gl3 gene contains only a single exon.

Development of KASP Markers and Identification of a QTL …

Web2 nov. 2024 · RNA samples were submitted to the Genome Institute of Singapore (GIS) for library preparation, RNA-seq and subsequent bioinformatic analysis for differential gene … WebDNA sequencing is the process of determining the nucleic acid sequence – the order of nucleotides in DNA.It includes any method or technology that is used to determine the order of the four bases: adenine, guanine, … subtitle reborn rich

Combining QTL-seq and linkage mapping to fine map a candidate …

Web16 apr. 2024 · Combined QTL mapping and RNA-Seq profiling reveals candidate genes associated with cadmium tolerance in barley.pdf Available via license: CC BY Content may be subject to copyright. Web11 sep. 2024 · Identification of QTLs controlling the heat injury index in tomato using QTL-seq. The heat injury phenotypes in the 200 F 2 plants were found to be significantly different after 48 h of high-temperature stress treatment by observing the growth status of the true leaves and the whole plant. Extremely heat-tolerant strains showed no apparent … Web16 apr. 2024 · For chlorosis and necrosis traits, the major QTL explained 47.24% and 38.59% of the phenotypic variance, respectively. RNA-Seq analysis of the parental … painted caves montana

Frontiers Fine Mapping and Cloning of a Major QTL qph12, …

A major QTL and candidate genes for capsaicinoid biosynthesis in …

WebWaterlogging has increasingly become one of the major constraints to maize productivity in some maize production zones because it causes serious yield loss Bulked segregant … Web1 sep. 2024 · We used CIM method to determine the QTLs resistant to SCR in each of the three environments. In total four QTLs were detected, in which one QTL (qSCR1) was located on chromosome 5, two QTLs (qSCR2-1 and qSCR2-2) were located on chromosome 9, and one QTL (qSCR3) was located on chromosome 10 (Table 1).All of … painted cave roadWeb19 feb. 2024 · Ten QTLs for seed Fe and Zn content identified in the GB RIL population are shown on the right side of the corresponding linkage group. Red, purple, green, and orange represent the 18GZ, 18ZC, 19GZ, and 19ZC environments, respectively. Cyan represents the QTLs using QEI mapping analysis Full size image subtitle remover

"Web19 apr. 2016 · This study mapped a major QTL influencing four fiber quality traits to a 0.28-cM interval and identified three candidate genes by RNA-Seq and RT-PCR analysis. Integration of fine mapping and RNA-Seq is a powerful strategy to uncover candidates for QTL in large genomes. Background " - Identification of a major qtl rna-seq

Identification of a major qtl rna-seq

Fine mapping and causal gene identification of a novel QTL for …

Web23 mrt. 2024 · Quantitative trait locus (QTL) mapping approaches that employ next-generation sequencing (NGS), QTL sequencing and RNA-seq are powerful in identifying … WebWaterlogging has increasingly become one of the major constraints to maize productivity in some maize production zones because it causes serious yield loss Bulked segregant RNA-seq (BSR-seq) has been widely applied to profile candidate genes and map associated Single Nucleotide Polymorphism (SNP) markers in many species In this study, ten …

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Web13 nov. 2024 · Detection of a major QTL controlling capsaicinoid accumulation in the pericarp. Our QTL analysis revealed a total of 16 QTLs associated with capsaicinoid … Web10 aug. 2024 · Recently, a method of combining QTL-seq and RNA-seq was developed, and it can identify chromosome fragments or genes that can be verified by each other. Lately, a major QTL on chromosome 6 for capsaicinoid content was identified using QTL-seq and high-density genetic maps, and candidate genes were revealed by combining …

Web23 mrt. 2024 · Fine mapping narrowed down BnaC08cqDTF to an 86-kb region on chromosome C08. The region harbored fifteen genes. After comparative analyses of the … Web16 apr. 2024 · In summary, the integration of QTL mapping and RNA-Seq analysis assisted us to narrow down the region within the identified QTLs, where the likely underlying candidate genes can be detected. We found …

Web1 feb. 2024 · By combining QTL mapping and dynamic RNA-seq, here we identified a candidate gene BnaC09.APT5, which exhibited differential expression pattern between … Web30 mei 2024 · Request PDF Integrating GWAS, QTL, mapping and RNA-seq to identify candidate genes for seed vigor in rice (Oryza sativa L.) Seed vigor is an important seed quality trait in rice (Oryza sativa ...

WebThe first QTL mapped by QTL-seq overlapped with the major QTL detected by the QTL linkage analysis in the 1.0 to 1.9 Mb region of chromosome 3. Six of the QTLs from chromosomes 1, 2, 3, 9, and 11 contained the Jupiter allele, while the two QTLs from chromosomes 3 and 8 were Trenasse alleles ( Table 6 ).

DNA sequencing may be used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes, or entire genomes of any organism. DNA sequencing is also the most efficient way to indirectly sequence RNA or proteins (via their open reading frames). In fact, DNA sequencing has become a key technology in many areas of biology and other sciences such as medicine, forensics, and anthropology. subtitle remover online freeWeb13 nov. 2024 · A whole-genome sequencing-based QTL-seq strategy was employed, identifying a major QTL on chromosome 6. To validate the QTL on chromosome 6, we performed traditional QTL mapping using the same population in QTL-seq with an additional biparental population. painted cedarWeb21 mrt. 2024 · A major fraction of loci identified by genome-wide association studies (GWASs) lead to alterations in alternative splicing, but interpretation of how such alterations impact proteins is hindered by the technical limitations of short-read RNA-seq, which cannot directly link splicing events to full-length transcript or protein isoforms. Long-read RNA … painted cds easyWebA major QTL and candidate genes controlling capsaicinoid content in the pericarp were identified by QTL-seq and RNA-seq in Capsicum chinense. Capsaicinoid biosynthesis … painted cdsWeb15 aug. 2024 · Through evaluating the salt tolerance of 285 ILs at the seedling stage, a total of 10 quantitative trait loci (QTLs) related to salt tolerance were identified on … painted cavesWeb20 sep. 2024 · The RNA samples of the two bulks and the two parents were sequenced for SNPs identification. Stem rust resistance QTL was validated on chromosome 2U of Ae. umbellulata in the same region in … subtitle resident evil welcome to racoon cityWebFine mapping narrowed down BnaC08cqDTF to an 86-kb region on chromosome C08. The region harbored fifteen genes. After comparative analyses of the DNA sequences for … subtitle repository